Transcript Tentative Plans for the C

Tentative Plans for the C-H
PP Workshop in Bangkok
August 9, 2014
SiMR Building, Siriraj Hospital,
Mahidol University,
Bangkok, Thailand
A Tentative Agenda for the Bangkok C-HPP Workshop
(for Co-Chairs’ Conf Call, March 14, 2014)
Title: 10th C-HPP Workshop in Bangkok, Thailand
(VT Note: Having the word “C-HPP Workshop” would be helpful to request for
budgets and other supports from my institute.)
Date
August 9, 2014
Time
08:30- 18:00
Venue
SiMR Building, Siriraj Hospital, Mahidol University, 2 Wanglang Road (formerly
Prannok Road), Bangkok, Thailand
Chair (Convener)
Organizing Chair: William S. Hancock
Program Coordinators: Young-Ki Paik and Gyorgy Marko-Varga
Administrator: Peter Horvatovich, Secretary General
Theme: C-HPP Data Management and Integration
Chao Phraya River
SiMR Building
Former Complex
(Research Excellence Center)
SiPH Building
(Clinical Excellence Center)
Siriraj Hospital Area
SiMR Building
Siriraj Hospital Area
Grand Palace
The Grand Palace is located on the opposite side of
Chao Phraya River
Tentative Program (08:30-18:00)
8:30-8:45
University)
Welcome & Opening Remark
(Dean of Faculty of Medicine Siriraj Hospital, Mahidol
Details will be available later.
Other Notes
- C-HPP EC, PI of each chromosome team who joins, and
co-PI of Chr12 team will be covered for an extra night
accommodation.
- If we set a half-day workshop, an afternoon tour to the Grand
Palace & Temple of the Emerald Buddha (Wat Phra Kaew),
which is located on the other side of the main Chao Phraya
River, would be a great experience for all of you.
- Alternatively, if the program needs to be extended to the
whole day, the tour on the next day is still possible (but you
need to stay for one more day ).
- There will be shuttles for transportation between hotel and the
workshop venue.
- Please see the attached PPT to look how the venue looks like.
Update of Databases
• Target for chromosome reports – JPR
special issue approx. June 2015
• Data submission – Proteomexchange
• Download and sharing of data sets
• Construction of a RNA-Seq data sets
• Nextprot data integration of GPM data
NeXtProt Annotation Categories
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Protein evidence
Proteomic evidence
HPA
PTM information
Protein-protein interactions
Binary interactions
Disease information
Pathways
Function – experimental vs. annotated
Chromosome teams integration
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Share information about sample sets analyzed
Provide easily downloaded data sets
Sharing of reagents such as antibodies
Disease/biology collaborations based on pathways,
gene sets or amplicons
• See next slide for an examples where specific
tissues would help chr. 17 missing proteins
• Suggestion each team prepare such plots for
sharing among groups
Missing Proteins on chromosome 17
Tissue
Genes
Nasal
OR1D5
OR1G1
OR1A2
OR1A1
OR3A2
OR3A3
Protein
Evidence
Tissue
Genes
Hair Cortex
KRTAP15
KRTAP13
KRTAP41
KRTAP171
RAMP
2
Protein
Evidence
Tissue
Genes
Brain Cerebellum
DOC2B
RND2
STH
HOXB1
Protein
Evidence
Protein level evidence in Uniprot
Transcript level evidence in Uniprot
RNF43
KCNJ16
OR4D1
OR4D2