Transcript Metabolism

Got bands?
• With your primers vs CF genomic DNA
Announcements
•
Homework: Mutation Translation due
•
VF: If want to participate in pass with a TA email
me by midnight today. As mentioned before,
please study the Photosynthesis movie from
website, textbook has errors.
What’s wrong with this picture?
Primary
acceptor
Primary
acceptor
Fd
Fd
Pq
NADP+
reductase
Cytochrome
complex
NADPH
Pc
Photosystem I
Photosystem II
ATP
NADP+
+ H+
Announcements
•
Homework: Mutation Translation due
•
VF: If want to participate in pass with a TA email
me by midnight today. As mentioned before,
please study the Photosynthesis movie from
website, textbook has errors.
•
Exam II: Requested early, try for Thursday.
•
Textbook: For today you were to read 6 pages
on Metabolism. Stand up my peeps.
Make the mRNA then protein
ATGGTACGC
Make the mRNA then protein
5’-ATGGTACGC
Make the mRNA then protein
5’-ATGGTACGC
(sense)
Make the mRNA then protein
5’-ATGGTACGC
(sense)
Where’s AUG?!
Make the mRNA then protein
5’-ATGGTACGC
(sense)
Make the mRNA then protein
5’-ATGGTACGC
(sense)
5’-AUGGUACGC
Make the mRNA then protein
5’-ATGGTACGC
(sense)
5’-AUGGUACGC
5’-UACCAUGCG
Make the mRNA then protein
5’-ATGGTACGC
Make the mRNA then protein
5’-ATGGTACGC
3’-TACCATGCG
Make the mRNA then protein
5’-ATGGTACGC
3’-TACCATGCG
Make the mRNA then protein
5’-ATGGTACGC
5’-AUGGUACGC
3’-TACCATGCG
Make the mRNA then protein
5’-ATGGTACGC
(sense)
5’-AUGGUACGC
Make the mRNA then protein
3’-ATGGTACGC
(sense)
Make the mRNA then protein
5’-CGCATGGTA
(sense)
Ribosome
mRNA
Signal
peptide
Signal
peptide
removed
Signalrecognition
particle (SRP)
CYTOSOL
ER LUMEN
SRP
receptor
protein
Translocation
complex
ER
membrane
Protein
Protein Synthesis 1971
Protein Synthesis 1971
LISTEN
Sucrose (C12H22O11)
Sucrase
Glucose (C6H12O6)
Fructose (C6H12O6)
Enzymes you know?
Substrate
Active site
Enzyme
(a)
Enzyme-substrate
complex
(b)
Linus Pauling
Nobel Prize Chemistry & Nobel Peace Prize
• “I think that enzymes are molecules that are
complementary in structure to the activated
complexes of the reactions that they
catalyse”
A
B
C
D
Transition state
A
B
C
D
EA
Reactants
A
B
∆G < O
C
D
Products
Progress of the reaction
Course of
reaction
without
enzyme
EA
without
enzyme
EA with
enzyme
is lower
Reactants
Course of
reaction
with enzyme
∆G is unaffected
by enzyme
Products
Progress of the reaction
Regulation of Activity [Feedback]
Substrate
Active site
Competitive
inhibitor
Enzyme
Noncompetitive inhibitor
(a) Normal binding
(b) Competitive inhibition
(c) Noncompetitive inhibition
What is product inhibition or negative feedback?
Start of
pathway
X
Enzyme 1
Intermediate
Enzyme 2
Presence of product inhibits enzyme 1
Intermediate
Enzyme 3
Product
PROTEINS, CARBOHYDRATES AND FATS CAN ALL
FURNISH SUBSTRATES FOR CELLULAR RESPIRATION
Fatty acids
Fats
Carbs
Proteins
Glycerol
Sugars
Glucose
Pyruvate
Amino acids
NH3
Acetyl CoA
Leaves contain millions of chloroplasts.
Cell
Chloroplasts
Chloroplasts are highly structured, membrane-rich organelles.
Outer membrane
Inter membrane space
Inner membrane
Granum
Stroma
Outer membrane
Intermembrane space
Inner membrane
?
Cristae
424 nm
A vesicle formed from an “inside-out”
mitochondrial membrane
Membrane proteins
with a “stalk”
and “knob”
What do the “stalk-and-knob” proteins do?
Observation 1: When
knobs are shaken off
vesicles, no ATP
synthesis occurs.
Observation 2:
Isolated knobs can
Hydrolyze ATP to
ADP + Pi .
Observation 3:
When knobs are added
back to vesicles, ATP
synthesis can occur.
Conclusion: The “stalk-and-knob”
protein is the ATP synthase.
THE STRUCTURE OF ATP SYNTHASE
+
H+
H
+
H
Intermembrane space
H+
H+
FO unit
Mitochondrial matrix
Rod
H+
F1 unit
ADP + Pi
ATP