Transcript Biomed meeting, Lyon, 2006/04/28

Enabling Grids for E-sciencE
NA4 Biomed : organisation of work
V. Breton
LPC of Clermont-Ferrand (CNRS/IN2P3)
Biomed meeting, Lyon, 2006/04/28
www.eu-egee.org
EGEE-II INFSO-RI-031688
WISDOM in EGEE-2, biomed meeting, 2006/04/28
NA4 Biomed organisation
Enabling Grids for E-sciencE
• Management : 1 activity sector coordinator and 2
deputies (Vincent B., Johan M., Christophe B.)
– Representation at Technical Coordination Group : Johan,
Ignacio, Christophe
– Representation at NA4 steering committee : Johan, Christophe,
Vincent
• Scientific organisation : 3 research areas (Medical
imaging, bioinformatics, drug discovery
• Virtual organisation
– EGEE: 1 biomed VO (manager : Yannick Legré)
– EGEE-2 : 1 vs 3 VOs, issue to discuss today
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Biomed Task Force
Enabling Grids for E-sciencE
• Duties
– User support
– Application development
– Application deployment (data challenge)
• Members: generally engineers funded by European
Commission
– At least 1 member by participating institute
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Common interest duties
Enabling Grids for E-sciencE
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User support
OAG (Operation Advisory Group)
Technical Coordination Group
NA4 SC
QAG
UIG
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Meetings
Enabling Grids for E-sciencE
• At least 2 general NA4 Biomed meetings per year at
EGEE conference and User forum.
– Next general meeting at EGEE conference in september
• Specific meetings for each research area
– Drug Discovery : June 6 in Valencia
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Deliverable and milestones
Enabling Grids for E-sciencE
• Contributions needed for the NA4 deliverables and
milestones
– Generally, a brief description of the applications under
deployment
– Contributions needed to user surveys
• Contributions needed to review the other activity
deliverables and milestones
– Try to involve more NA4 members than in EGEE
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Summary of partner contributions
Enabling Grids for E-sciencE
Institute
Partner
number
Funding / HM
biomed
Name/email of advisor
CNRS
22
877,100 / 294
C. Blanchet, V. Breton, J.
Montagnat
TAU
52
51,200 / 24
Prof. David Horn
[email protected]
JKU/RISC
2
69,200 / 12
UPV
59
ITB
Activity sector
Attendance in Lyon
All
C. Blanchet, V. Breton,
N. Jacq, R. Mollon, J.
Montagnat
Mark Silberstein
[email protected]
BI
Mark Silberstein
Wofgang Schreiner
[email protected]
Karoly Bosa
[email protected]
MI
Karoly Bosa
238,915 / 48
Vicente Hernandez
[email protected]
Ignacio Blanquer
[email protected]
MI&BI
Ignacio Blanquer
78
54,932 / 24
Luciano Milanesi
[email protected]
Tbc
DD&BI
Not represented
CSCS
?
?/6
Peter Kunzt
[email protected]
Tbc
DD&BI
Excused – provided
slides
MTASZTAKI
8
46,600 / 16
Peter Kacsuk
[email protected]
[email protected]
Miklos Kozlovszky
[email protected]
http://www.lpds.sztaki.hu
Tbd
Miklos Kozlovszky
NESC/UEDIN
17
91,818 / 12
Malcolm Atkinson
[email protected]
David Fergusson
[email protected]
UIG?
Not represented
FhG/SCAI
27
171,075 / 12
Horst Schwichtenberg
[email protected]
ofer.de
Astrid Maas
[email protected]
e
DD
Astrid Maas
IPP-BAS
42
0? / 36
Dr. Emanouil Atanassov
[email protected]
Todor Gurov [email protected]
Aneta Karaivanova [email protected]
MI
Excused – provided
information
UCY
50
64,400 / 18
Marios D. Dikaiakos
[email protected]
Maria Poveda
[email protected]
MI
Excused – provided
slides
CNB/CSIC
56
150,322 / 48
Jose-Maria Carazo
[email protected]
Structural
biology
Excused – provided
slides
SRCE
90
50,893 / 22
[email protected]
[email protected]
EGEE-II INFSO-RI-031688
Name/email of NA4 participant
Tbd
Not represented
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Relationship with other EC projects
Enabling Grids for E-sciencE
• Partner projects:
– EELA
 Drug discovery and medical simulation
 Contact point: UPV
– BioinfoGRID
 Drug discovery and bioinformatics
 Contact point: CNR-ITB
– Embrace
 Drug discovery and bioinformatics
 Contact point: CNRS
• Proposed collaboration model:
– Joint scientific meetings
 Examples: May 26th meeting in Pisa on bioinformatics, June 6th
meeting in Valencia on drug discovery
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Issues
Enabling Grids for E-sciencE
• Designing a portal for end users. There is work to do to
build a portal which is more specific to some
applications
– Role of P-GRADE
• Identifying the representatives of the new partners in
the Biomed task force
• Moving from one to 3 biomedical VOs (MI, BI, DD)
– pro: more visibility in the project, deployment of specific services
(MDM)
– Con: division of forces, lack of resources for new VOs,
integration of related projects (EELA, BioinfoGRID), extra VO
management effort
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