Transcript Semantic Annotation of Painting Museum

Semantic Species
Taxonomy
Shima Izadpanahi
CMPE583 Term project
OUTLINE
Taxonomy
 Platforms
 Species taxonomy
 Ontology Development
 Application
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Scientific Classification of organisms
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Taxonomy: is the
practice and science of
classification.
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Scientific classification:
is a method by which
biologists group and
categorize species of
organisms.
The hierarchy of scientific classification.
Classification hierarchy:kingdom
•kingdom is the highest taxonomic
rank .
There are six kingdoms
(Animalia, Plantae, Fungi,
Protoctista, Archaea, and Monera)
Classification hierarchy, phylum
Each kingdom is divided into
smaller groups called phylum.
phyla can be thought of as grouping
animals based on general body plan.
Chordata (animals with
notochords) and order is Carnivora
(mammals that eat meat).
The best known animal phyla are the
Mollusca, Porifera, Cnidaria,
Platyhelminthes, Nematoda, Annelida,
Arthropoda, Echinodermata, and
Chordata, the phylum to which
humans belong.
Classification hierarchy,Class
For example,
Mammalia is the class used in the
classification of panthers, whose
phylum is Chordata (animals with
notochords) and
order is Carnivora (mammals that eat
meat).
and family is Felidae (family of cats)
and Genus is panthera (the cats )
And species is (panthera pardus)
PLATFORMS
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Protégé: Is Graphical ontology editor, An open source
application, Easy to use ,Platform independent
Java: Platform independent programming environment,
Object oriented has Powerful APIs .(JDK 5)
JBuilder 2006: IDE for java, Provided by Borland company
JSP: For developing dynamic websites
Jena: Java API for ontology manipulation, Provided by HP
labs, Create and manipulate RDF graphs. (Jena 2.2)
RDQL: Ontology query language for Jena
Tomcat: web server for handling jsp request (Tomcat server
5.5)
Ontology Classes
•Kingdom: the highest rank in classification
•phylum: the largest generally accepted groupings of
animals and other living things
•Class: in the scientific classification of organisms in
biology below phylum and above order.
•Order:The order as a distinctive rank of biological
classification having its own distinctive name
•Family: Family, as a rank intermediate between order
and genus, is a relatively recent invention.
•Genus: is a low-level taxonomic rank used in the
classification of living and fossil organisms.
•Specie:a species is one of the basic units of
biological classification
Taxonomy Object Properties
Taxonomy Data type Properties
Data type Properties are to bind a value to an individual.
Web Site Features:
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Classification Layer Pages
Taxon detail pages
All entity page
Statistics page
Query
Read description:
SELECT ?x
WHERE ( nss:name, nss:hasDescription, ?x)
Taxonomy parent:
SELECT ?x
WHERE ( nss:name, nss:isPartOfKingdom, ?x)
Read all taxonomic data:
SELECT ?x
WHERE ( ?x, ?a, ?b)
QUESTIONS?