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C3- Bioinformatics Support for
Harvard Researchers
Reddy Gali
What kind of support
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Education
Support / Consulting
Outreach
Informatics
Collaboration
Education - Workshops
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Introduction to Microarrays and affymetrix data
analysis
Metacore Pathway Analysis
Metadrug – Compound based pathway analysis
Transcription Factor Analysis using ExPlain,
TransFac and Transpro
Biobase- Biological Knowledge Library
Ingenuity Pathway Analysis
Sequence Alignment – BLAST & Clustal
Genome Browsing
Introduction to R/Bioconductor
ENSEMBL
Fundamentals in Matlab
Education –Workshops
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Illumina gene expression array analysis
using Bioconductor/R
Two Channel / cDNA gene expression
analysis
Integrative Genomics Viewer - Exploration
of large integrated sequence and genomic
datasets
cDNA microarray analysis
Perl and BioPerl for Biologists
Biomedical Imaging Analysis
Expression analysis using GenePattern
MicroRNAs Analysis
Illumina Microarray data analysis
Education - Signup
Education - Signup
Education - Signup
Collaboration - Workshops
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Josiah Altschuler– DFCI
Deepti Anand – Joslin
Amir Karger – FAS -RC
Steven Finch – FAS-Statistics
Helga Thorvaldsdottir - MIT
Ravi Gutti – Children’s
Raymond Didanato - Biobase
Michael Reich – Broad MIT
Galina Gabriel– Children’s
Collaboration - Workshops
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Anosha Siripala - Genego
Nipun Patel – MGH
Aedin Culhane – DFCI
Reddy Gali – CBMI/Countway
David Osterbur – CBMI/Countway
Paul Bain – CBMI/Countway
Lellean JeBailey – Genego
Collaboration - Projects
• Research Projects – Gene Expression
– High fat diet in Pigs - BIDMC
– Cord and Peripheral blood cells in HumansChildren’s
– mRNA house keeping genes– Children’s
Support / Consulting
•HMS
•HSDM
•BWH
•BIDMC
•CH
•Joslin
•FAS
•MGH
•CBMI
•HSPH
Outreach
Harvard Catalyst Site
Harvard Catalyst e-mail
Word of Mouth / Flyers
ABCD e-mail lists
November 2009 – June 2010
55 bioinformatics workshops ~ 1000 attendees
110 consulting sessions – 50 distinct users
99 RT tickets since February
C3 Bioinformatics Flyer
Thank you