Transcript GBIF European Regional Nodes Meeting 2012

GBIF European Regional
Nodes Meeting 2013
Thematic Node Manager
Sónia Dias
Research Programme Officer
EURISCO Coordinator
Bioversity International
GBIF European Regional Nodes Meeting 2013.
The Finish Digitarium, 6 – 8 March, Joensuu, Finland
What it is
http:eurisco.ecpgr.org
EURISCO roles and aims
• Providing technical support for the creation/development of
National PGR Inventories
• Develop and maintain an European PGR Search Catalogue with
passport data on ex situ collections maintained in Europe by:
having the possibility to frequently update the Catalogue from
the National PGR Inventories
providing easy access to information on PGR maintained ex
situ in Europe, thus facilitate locating and accessing it.
• Assisting countries in meeting national obligations and
commitments to:
the ITPGRFA (namely Art. 5, 12, 13, 14, 16 and 17)
the FAO (namely GPA Priority Activity 17)
the CBD (namely Art. 7; 9; 17)
…, among others …
http://eurisco.ecpgr.org
NFPs Network
Albania
Armenia
Austria
Azerbaijan
Belarus
Belgium
Bosnia and
Herzegovina
Bulgaria
Croatia
Cyprus
Czech
Republic
Estonia
Finland
France
Georgia
Germany
Greece
Hungary
Ireland
Israel
Italy
Latvia
Lithuania
Macedonia
Malta
Moldova
Montenegro
Mr Belul Gixhari
Ms Marina Hovhannisvan
Mr Wolfgang Kainz
Mr Afig Mammadov
Mr Iryna Matys
Mr Marc Lateur
Ms Marina Radun
Ms Nikolaya Velcheva
Ms Mirta Culek
Mr Angelos Kyratzis
Ms Iva Faberová
Mr Vahur Kukk
Ms Merja Hartikainen
to be nominated
Ms Tamar Jinjikhadze
Mr Siegfried Harrer
Ms Parthenopi Ralli
Mr Attila Simon
Mr Noel Collins
Mr Lea Mazor
Mr Petra Engels
Mr Anita Gaile
Mr Raimondas Baltrenas
Mr Suzana Kratovalieva
Ms Maureen Delia
Mr Anatol Ganea
Mr Miroslav Cizmovic
Netherlands
NordGen
Norway
Poland
Portugal
Romania
Russian
Federation
Serbia
Slovakia
Slovenia
Spain
Sweden
Switzerland
Turkey
Ukraine
United Kingdom
Mr Theo van Hintum
Mr Jonas Nordling
Mr Åsmund Asdal
Ms Zofia Bulinska-Radomska
Ms Celina Matos
Mr Neculai Cristea
Mr Vladimir Korneev
Ms Milena Savic Ivanov
Mr Lubomir Mendel
Mr Vladimir Meglic
Mr Edurne Aguiriano
Ms Lena Ansebo
Mr Gert Kleijer
Mr Ahmet Semsettin Tan
Ms. Kseniia Dokukina
Mr Ian Thomas
+ Cyprus
+ Israel
http://eurisco.ecpgr.org
How it works
Data quality
controls and
reporting
Facing the reality
GIS
Taxonomy
Data
Analysis
Data
Sharing
Data
Management
Data
Capture
Quality and Quality
http://eurisco.ecpgr.org
Strengthening network participation improving data quality and quantity
2012
2010
31%
35%
Strengthening network participation improving data quality and quantity
2.2%
0.6%
0.2%
12.3%
0.9%
13.2%
0.3%
6.4%
7.1%
6.1%
6.1%
44.0%
0.6%
Armenia
Austria
Cyprus
Czech Republic
Estonia
Germany
Ireland
Netherlands
Nordic Countries
Poland
Portugal
Spain
Switzerland
2010
MLS registration in 2011
is 22.5% of the total
EURISCO accessions,
covering around 65% of
the species from Annex I
of the ITPGRFA
Current Status
National Inventories
Genebanks
Country sources
Wild species
Breeding/research material
Traditional cultivars/landraces
Improved cultivars
International Treaty (MLS)
Species
Genera
Geo-references, etc
Total
43 Countries
325
220
107,872 accessions
161,664 accessions
273,951 accessions
207,494 accessions
251,335 accessions
>35,200
> 5,300
1,112,779 accessions
@Bioversity and satellite databases
Pillars to information
GENESYS
Trait IP
CWR-P
Germplasm
databases
EURISCO
EUFGIS
Next…relevance to science!
Accessions Ex situ CWR In situ Landraces On farm Traits ontologies Genotype
And to policy: EU, CBD- Aichi Targets, ITPGRFA, Nagoya
Protocol, GSPC, IPBES… also linking with other regional and
interregional initiatives
Moving on…
- Node niche
- biodiversity monitoring / open data platform / science and research
services –PGR
- CWR and LR-In situ and on farm inventories conservation strategies
- Development backend, infrastructure
- accommodating phenotypic, environmental, data
+
Cyprus
- Ontologies driven
+ Israel
- Enhanced quality control system and features
- linkages with other data types- genomics…
- …
- Outreach
- Website, e-bulletin, support, helpdesk
- Training
- Training on demand (opportunistic) -documentation
Vision: a Global Agrobiodiversity Information Facility
In situ and On farm
PGR Secure “Novel
characterization of crop wild
relative and landrace
resources as a basis for
improved crop breeding”
http://www.pgrsecure.org/
Objective
•To produce a web-based CWR and LR
Trait Information Portal – TIP (Task 2.1)
(a) provide useful trait information (phenomics, genomics and transcriptomics data) on
European CWR and LR diversity, particularly for the case study genera, Avena,
Beta, Brassica and Medicago;
(b) provide baseline biodiversity information on CWR and LR diversity and its
conservation;
(c) (c) establish links with related existing information systems regarding genomic
characterization and ensure integration with other relevant plant genetic resources
for food and…….
Work package 2: Informatics
Lead partner: BIOVER.; all partners involved .
TIP platform
Mong DB
Neo4j
Ontologies – annotation,
data collation
….
http://www.pgrsecure.bham.ac.uk/sites/default/files/documents/newsletters/CWR_Issue_8.pdf (page28)
Looking forward
•
•
•
•
•
•
Data quality, Data digitalization, Data analysis
Upload processes and system, Ontologies, Open data platform
Biodiversity monitoring, Contribute use cases
Science and research services
ABD knowledge base
ABD Informatics Consortium: standards, methodology and software for
ABD/PGR
• In Situ and on Farm CWR and LR Trait Information Portal-PGR
Secure project (www.pgrsecure.org ) – High relevance for policy
and science needs
– Inventories
– Checklist
– Conservation strategies
– Trait information
Contributors
Thanks
Milko Skofic
EURISCO Network National
Focal Points