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Transgenic Development
(Plant Genetic Engineering)
Genetic Engineering
The process of manipulating and transferring
instructions carried by genes from one cell to
another
Why do scientists want to change
gene instructions?
 to produce needed chemicals
 to carry out useful processes
 to give an organism desired characteristics
THE SCIENCE OF GENETIC
ENGINEERING
Isolate desired gene for
a new trait from
any organism
Gene inserted into
plasmid.
Isolate plasmid DNA
Introduce modified plasmid into
bacterium for replication.
Grow in culture to
replicate
Plant transformation
getting DNA into a cell
getting it stably integrated
getting a plant back from the cell
Requirement
1. a suitable transformation method
2. a means of screening for transformants
3. an efficient regeneration system
4. genes/constructs
vectors
reporter genes
‘genes of interest’
Promoter/terminator
selectable marker genes
Transformation technique

Biological.
• Agrobacterium mediated transformation.

Mechanical.
• Particle bombardment.
• Electroporation.
• Microinjection.

Chemical.
• Polyethylene glycol.
Transformation methods
DNA must be introduced into plant cells
Indirect
Agrobacterium tumefaciens
Direct
1. Microprojectile bombardment
2. Electroporation
3. Microinjection
Method depends on plant type, cost, application
Agrobacterium-mediated
transformation
Transformation by the help of agrobacterium
Agrobacterium is a ‘natural genetic engineer’
i.e. it transfers some of its DNA to plants
Agrobacterium tumefaciens
Agrobacterium
Genomic DNA
Genomic DNA
Ti plasmid
(carries the gene of
interest)
Restriction
enzyme A
Restriction
enzyme A
+
Empty
plasmid
Gene of
interest
Ti plasmid with the gene of interest
Plant cell
Agrobacterium tumefaciens
Ti plasmid with the new gene
cell’s
DNA
+
Agrobacterium
Transformation
Plant cell
The new
gene
Transgenic plant
Cell division
T-DNA
binary
vector
A. tumefaciens
Success Factor
Species
 Genotypes
 Explant
Agrobacterium strains
 Plasmid
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Direct gene transfer
Introducing gene directly to the target cell
1. Electroporation
2. Microinjection
3. Particle Bombardment
Electroporation
Explants: cells and protoplasts
Most direct way to introduce foreign DNA into the nucleus
Achieved by electromechanically operated devices
Transformation frequency is high
Electroporation Technique
Power supply
Plant cell
Duracell
Protoplast
DNA containing
the gene of interest
DNA inside the
plant cell
The plant cell with
the new gene
Microinjection
Most direct way to introduce
foreign DNA into the nucleus
Achieved by electromechanically
operated devices that control the
insertion of fine glass needles into
the nuclei of individuals cells,
culture induced embryo, protoplast
Labour intensive and slow
Transformation frequency is very
high, typically up to ca. 30%
Microprojectile bombardment
• uses a ‘gene gun’
• DNA is coated onto gold
(or tungsten) particles
(inert)
• gold is propelled by helium
into plant cells
• if DNA goes into the
nucleus it can be
integrated into the plant
chromosomes
• cells can be regenerated to
whole plants

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In the "biolistic" (a cross between biology and ballistics )or "gene gun"
method, microscopic gold beads are coated with the gene of interest
and shot into the plant cell with a pulse of helium.
Once inside the cell, the gene comes off the bead and integrates into
the cell's genome.
“Gene Gun” Technique
DNA coated
golden particles
Gene gun
Cell’s DNA
Plant cell
A plant cell with
the new gene
Transgenic plant
Cell division
Model from BioRad:
Biorad's Helios Gene
Gun
In Planta Transformation
♣
♣
♣
Meristem transformation
Floral dip method
Pollen transformation
Screening technique
Technique which is exploited to screen the transformation product
(transformant Cell)
Reason:
There are many thousands of cells in a leaf disc or callus clump - only
a proportion of these will have taken up the DNA, therefore can get
hundreds of plants back - maybe only 1% will be transformed
Screening (selection)
Select at the level of the intact plant
Select in culture
• single cell is selection unit
• possible to plate up to 1,000,000 cells on a Petridish.
• Progressive selection over a number of phases
Selection Strategies
 Positive
 Negative
 Visual
Selectable marker gene
Selectable marker gene
Reporter gene
Positive selection
 Only individuals with characters satisfying the breeders are
selected from population to be used as parents of the next
generation
 Seed from selected individuals are mixed, then progenies are
grown together
 Add into medium a toxic compound e.g. antibiotic, herbicide
 Only those cells able to grow in the presence of the selective
agent give colonies
 Plate out and pick off growing colonies.
 Possible to select one colony from millions of plated cells in a
days work.
 Need a strong selection pressure - get escapes
Negative selection
 The most primitive and least widely used method which can
lead to improvement only in exceptional cases
 It implies culling out of all poorly developed and less
productive individuals in a population whose productivity is to
be genetically improved
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Add in an agent that kills dividing cells
Plate out leave for a suitable time, wash out agent then put on
growth medium.
All cells growing on selective agent will die leaving only nongrowing cells to now grow.
Useful for selecting auxotrophs.
Positive and Visual Selection
Regeneration System
How do we get plants back from cells?
We use tissue culture techniques to regenerate
whole plants from single cells
Getting a plant back from a single cell is
important so that every cell has the new DNA
Transformation series of events
Callus formation
Transform
individual cells
Remove from sterile conditions
Auxins
Cytokinins
Gene construct
BamHI
P SAG12 ipt
nptII
LB T 35S
P 35S
gus-intron
T nos T 35S
P 35S
RB
Gene construct
Vectors
Promoter/terminator
Reporter genes
Selectable marker genes
‘Genes of interest’.
Vectors
A vehicle such as plasmid or virus for carrying recombinant
DNA into a living cell
 Ti-plasmid based vector
a. Co-integrative plasmid
b. Binary plasmid
 Coli-plasmid based vector
a. Cloning vector
b. Chimeric Plasmid
 Viral vector
a. It is normally not stably integrated into the plant cell
b. It may be intolerant of changes to the organization of its genome
c. Genome may show instability
Ti plasmid
The binary Ti plasmid system
Binary vector system
Binary vector system
Promoter
1.
2.
3.
4.
5.
6.
A nucleotide sequence within an operon
Lying in front of the structural gene or genes
Serves as a recognition site and point of attachment for
the RNA polymerase
It is starting point for transcription of the structural
genes
It contains many elements which are involved in
producing specific pattern and level of expression
It can be derived from pathogen, virus, plants
themselves, artificial promoter
Types of Promoter
 Promoter always expressed in most tissue (constitutive)
-. 35 s promoter from CaMV Virus
-. Nos, Ocs and Mas Promoter from bacteria
-. Actin promoter from monocot
-. Ubiquitin promoter from monocot
-. Adh1 promoter from monocot
-. pEMU promoter from monocot
 Tissue specific promoter
-. Haesa promoter
-. Agl12 promoter
 Inducible promoter
-. Aux promoter
 Artificial promoter
-. Mac promoter (Mas and 35 s promoter)
Reporter gene
Easy to visualise or assay
- ß-glucuronidase (GUS)
(E.coli)
-green fluorescent protein (GFP)
(jellyfish)
- luciferase
(firefly)
GUS
The UidA gene encoding activity is commonly used. Gives a blue
colour from a colourless substrate (X-glu) for a qualitative assay.
Also causes fluorescence from Methyl Umbelliferyl Glucuronide
(MUG) for a quantitative assay.
Cells that are transformed with GUS will form a blue
precipitate when tissue is soaked in the
GUS substrate and incubated at 37oC
this is a destructive assay (cells die)
5 -- glucuronidase Genes
 very stable enzyme
 cleaves -D glucuronide linkage
 simple biochemical reaction
• It must take care to stay in linear range
 detection sensitivity depends on substrate used in
enzymatic assay (fast)
• colorimetric and fluorescent substrates available
5 - -glucuronidase Genes
 Advantages
• low background
• can require little equipment (spectrophotometer)
• stable enzyme at 37ºC
 Disadvantages
• sensitive assays require expensive substrates or considerable
equipment
• stability of the enzyme makes it a poor choice for reporter in
transient transfections (high background = low dynamic
range)
 Primary applications
• typically used in transgenic plants with X-gus colorimetric
reporter
β-Glucorodinase
gene
Bombardment of GUS gene
- transient expression
Stable expression of GUS in
moss
Phloem-limited expression of GUS
GFP (Green Fluorescent Protein)
GFP glows bright green when irradiated by blue or UV
light
This is a non destructive assay so the same cells can be
monitored all the way through
 It fluoresces green under UV illumination
 It has been used for selection on its own
Green fluorescent protein
(GFP)
 Source is bioluminescent jellyfish Aequora victoria
 GFP is an intermediate in the bioluminescent reaction
 Absorbs UV (~360 nm) and emits visible light.
 has been engineered to produce many different colors (green,
blue, yellow, red)
 These are useful in fluorescent resonance energy transfer
experiments
 Simply express in target cells and detect with fluorometer or
fluorescence microscope
 Sensitivity is low
 GFP is non catalytic, 1 M concentration in cells is required to
exceed auto-fluorescence
Green fluorescent protein
(GFP)
 Advantages
• can detect in living cells
• inexpensive (no substrate)
 Disadvantages
• low sensitivity and dynamic range
• equipment requirements
 Primary applications
• lineage tracer and reporter in transgenic embryos
GFP
protoplast
colony derived from
protoplast
regenerated plant
mass of callus
Luciferase
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luc gene encodes an enzyme that is responsible for
bioluminescence in the firefly. This is one of the few
examples of a bioluminescent reaction that only requires
enzyme, substrate and ATP.
Rapid and simple biochemical assay. Read in minutes
Two phases to the reaction, flash and glow. These can be
used to design different types of assays.
• Addition of substrates and ATP causes a flash of light that decays after a
few seconds when [ATP] drops
• after the flash, a stable, less intense “glow” reaction continues for many
hours - AMP is responsible for this
Luciferase
flash reaction is ~20x more sensitive than glow
glow reaction is more stable
• allows use of scintillation counter
• no injection of substrates required
• potential for simple automation in microplate format
Luciferase
Advantages
• large dynamic range up to 7 decades, depending on instrument
and chemistry
• rapid, suitable for automation
• instability of luciferase at 37 °C (1/2 life of <1hr)
• inexpensive
• widely used
 disadvantages
• Equipment requirement
• luminometer (very big differences between models)
• liquid scintillation counter (photon counter)
Selectable Marker Gene
Gene which confer tolerance to a phytotoxic substance
Most common:
1. antibiotic resistance
kanamycin (geneticin), hygromycin
Kanamycin arrest bacterial cell growth by blocking various steps in protein
synthesis
2. herbicide resistance
phosphinothricin (bialapos); glyphosate
Effect of Selectable Marker
Non-transgenic = Lacks Kan or Bar Gene
Plant dies in presence
of selective compound
X
Transgenic = Has Kan or Bar Gene
Plant grows in presence
of selective compound
Kanamycin


Targets 30s ribosomal subunit, causing a frameshift in every
translation
Bacteriostatic: bacterium is unable to produce any proteins
correctly, leading to a halt in growth and eventually cell death
Kanamycin use/resistance
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Over-use of kanamycin has led to many wild bacteria
possessing resistance plasmids
As a result of this (as well as a lot of side effects in
humans), kanamycin is widely used for genetic purposes
rather than medicinal purposes, especially in transgenic
plants
Resistance is often to a family of related antibiotics, and
can include antibiotic-degrading enzymes or proteins
protecting the 30s subunit
G418-Gentamycin
 source: aminoglycoside antibiotic related to
gentamycin
 activity: broad action against prokaryotic and
eukaryotic cells
• inhibits protein synthesis by blocking initiation
 resistance - bacterial neo gene (neomycin
phosphotransferase, encoded by Tn5 encodes
resistance to kanamycin, neomycin, G418
• but also cross protects against bleomycin and
relatives.
G418 - Gentamycin
Stability:
• 6 months frozen
selection conditions:
• E. coli: 5 g/ml
• Eukaryotic cells:
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300-1000 g/ml. G418 requires careful optimization for
cell types and lot to lot variations
Kill curves required
It requires at least seven days to obtain resistant colonies,
two weeks is more typical
Surviving cells
G418 - Gentamycin
Increasing dose ->
use and availability:
• perhaps the most widely used selection in mammalian
cells
• vectors very widely available
Hygromycin
source: aminoglycoside antibiotic from
Streptomyces hygroscopicus.
Activity: kills bacteria, fungi and higher
eukaryotic cells by inhibiting protein synthesis
• interferes with translocation causing misreading of
mRNA
resistance: conferred by the bacterial gene hph
• no cross resistance with other selective antibiotics
Hygromycin
stability:
• one year at 4 ºC, 1 month at 37 ºC
selection conditions:
• E. coli: 50 g/ml
• Eukaryotic cell lines:
 50 - 1000 g/ml (must be optimized)
 10 days- 3 weeks required to generate effect
use and availability:
• vectors containing hygromycin resistance gene are widely available
• in use for many years
Glyphosate resistance
Glyphosate = “Roundup”, “Tumbleweed” = Systemic
herbicide
Glyphosate inhibits EPSP synthase (Senolpyruvlshikimate-3 phosphate – involved in
chloroplast amino acid synthesis)
Escherichia coli EPSP synthase = mutant form  less
sensitive to glyphosate
 Cloned via Ti plasmid into soybeans, tobacco,
petunias
• Increased crop yields of crops treated with
herbicides
RoundUp Sensitive Plants
Shikimic acid + Phosphoenol pyruvate
+ Glyphosate
Plant
EPSP synthase
X
3-Enolpyruvyl shikimic acid-5-phosphate
(EPSP)
Without amino acids,
plant dies
X
X
Aromatic
amino acids
X
RoundUp Resistant Plants
Shikimic acid + Phosphoenol pyruvate
+ Glyphosate
Bacterial
EPSP synthase
RoundUp has no effect;
enzyme is resistant to herbicide
3-enolpyruvyl shikimic acid-5-phosphate
(EPSP)
With amino acids,
plant lives
Aromatic
amino acids
Bialaphos
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Glufosinate – active substance of a broad-spectrumherbicide = synthetical copy of the aminoacid
phosphinothricin produced by Streptomyces
viridochomogenes
Inhibit glutamine-synthetase (important enzyme in
nitrogen-cycle of plants) caused plant dies
Herbicide-tolerance is reached by gene-transfer from
the bacterium to the plant
The transfered gene encodes for the enzyme
phophinothricin-acetyl-transferase degrade glufosinate
Bialaphos
*Bialaphos
(Phosphinothricin-alanyl-alanine) is an herbicide that
inhibits a key enzyme in the nitrogen assimilation pathway,
glutamine synthetase, leading to accumulation of toxic levels of
ammonia in both bacteria and plant cells
Only those cells that have taken
up the DNA can grow on
media containing the selection
agent