biocyc-data-content - Bioinformatics Research Group at SRI

Download Report

Transcript biocyc-data-content - Bioinformatics Research Group at SRI

Data Content of BioCyc
Ingrid Keseler
1
SRI International Bioinformatics
Basic Things to Remember
• BioCyc is a collection of databases
• The banner and tool bar will help you:
• Know where you are
• Find what you need
• Many things are linked:
• Blue hyperlinks
• Graphics, icons are often links
• Help is available
2
SRI International Bioinformatics
A Tour of BioCyc
Follow along on your laptop computer while we
explore BioCyc:
• Databases
• Genome Browser
• Genes, Proteins, Regulation, Reactions, Pathways
• Overviews
3
SRI International Bioinformatics
Databases
4
SRI International Bioinformatics
Genome Browser
Tools > Genome Browser
You Are Here
Navigation
Options
5
SRI International Bioinformatics
Genes, Proteins
Regulation Summary Diagram
Summary with References
Links
6
SRI International Bioinformatics
Genes, Regulation
7
SRI International Bioinformatics
Genes, Proteins, Reactions
Two Reactions
Gene Ontology Terms
Pathway
8
SRI International Bioinformatics
Pathways
9
SRI International Bioinformatics
Overviews
Tools > Cellular Overview
10
SRI International Bioinformatics
Overviews
Tools > Regulatory Overview
11
SRI International Bioinformatics