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Proteins Learning outcomes • Describe the structure of an amino acid. • Describe the formation and breakage of peptide bonds in the synthesis and hydrolysis of dipeptides and polypeptides. © Pearson Education Ltd 2008 This document may have been altered from the original Proteins Basic amino acid structure - glycine Amino acid structure showing Rgroups (side chains) © Pearson Education Ltd 2008 This document may have been altered from the original Proteins Condensation and hydrolysis happens in the same way as in polysaccharide formation © Pearson Education Ltd 2008 This document may have been altered from the original Proteins Explain the term primary structure. The primary structure is just the sequence of amino acids in the polypeptide chain Primary structure of insulin In insulin there are 2 polypeptide chains, each with its own primary structure © Pearson Education Ltd 2008 This document may have been altered from the original There are a huge number of possible combinations of amino acids that can make up proteins. A four-amino-acid structure like this has 160,000 (20x20x20x20) possible forms, because each of the amino acids in the chain could be any one of the 20 that there are available. © Pearson Education Ltd 2008 This document may have been altered from the original Proteins Learning Outcomes • Explain the term secondary structure with reference to hydrogen bonding. • Explain the term tertiary structure with reference to hydrophobic and hydrophilic interactions, disulphide bonds and ionic interactions. © Pearson Education Ltd 2008 This document may have been altered from the original Proteins The polypeptide chains are some times held in a spiral shape by hydrogen bonds between the amino and carboxylic acid groups. This is called an “Alpha Helix” © Pearson Education Ltd 2008 This document may have been altered from the original Proteins This ribbon diagram shows a number of alpha helices linked together by less structured areas of the polypeptide chain to form the final protein structure Proteins The secondary structures (alpha helices and beta pleated sheets) are held in place by different kinds of bonds , this is the tertiary (third) level of structure © Pearson Education Ltd 2008 This document may have been altered from the original Proteins There are a number of bonds holding this structure together at the tertiary level. Proteins • The tertiary structure of proteins can be DENATURED by heating. • The heat increases the kinetic energy of the molecule and makes parts of it vibrate faster. • This means that the bonds (not co-valent) that hold the protein in its globular shape are broken and its complex shape will unravel. • This is particularly important in enzymes as it is the tertiary structure that defines the active site. Proteins Learning Outcomes • Explain the term quaternary structure with reference to the structure of haemoglobin. • Describe the structure of a collagen molecule. • Compare the structure and function of haemoglobin and collagen. © Pearson Education Ltd 2008 This document may have been altered from the original Haemoglobin • Haemoglobin is a globular protein that has a quaternary structure • This means it is made up of more than one polypeptide chain (it does not mean that all quaternary proteins have 4 polypeptide components!) • The polypeptide chains are held together by similar bonds as the tertiary structure • The haem area is called a “prosthetic” group. A molecule of oxygen can bind to each haem group Proteins Collagen molecules are made of repeating sequences of amino acids that form spiral structures. (Far left picture) Collagen protein is made of 3 polypeptide chains wound together rather like a rope. Hydrogen bonds hold the chains together(second picture from left) Each group of 3 chains is bonded to another group by co-valent bonds called cross links, thus fibrils are formed Many fibrils form a collagen fibre Collagen is a STRUCTURAL protein rather than a globular or metabolic protein