Transcript HCLS$$F2F$$2007$$11$$Agenda$BioRDF

BioRDF Task Force
BioRDF Activities
• Explore the effectiveness of current tools for making
data available as RDF/OWL
• Build a life sciences demo that spans from bench to
bedside using RDF/OWL to help scientist better
understand the value of the Semantic Web
• Document our finding to help accelerate the adoption
of the Semantic Web by others
http://esw.w3.org/topic/HCLSIG_BioRDF_Subgroup
Tool Assessment
Life Sciences Demo
• Created a knowledge base for Alzheimer’s Disease
• Details during Alan’s talk
Presentations
• WWW2007 Demo
• ISMB 2007 Demo
• ISMB BioOntology SIG Poster 2007
• Society for Neuroscience Poster Nov 2007
• Bridging Pharma and IT
• Drug Discovery Technology of Innovative Therapeutics
• Bio-IT World
• Modern Drug Discovery and Development Summit
• Massachusetts Biotechnology Panel
• eScience Institute; RDF, Ontologies and Meta-Data Workshop
• Systems Biology Conference
• Semantic Web Gathering
Documents
• SenseLab conversion
• Guide for KB
• URI note
BioRDF Participants
John Barkley (NIST), Olivier Bodenreider (NLM), Bill Bug
(Drexel), Kei Cheung (Yale University), Tim Clark (MGH),
Don Doherty (Brainstage Research), Michel Dumontier
(Carlton University), Ray Hookaway (HP), Vipul Kashyap
(Partners), June Kinoshita (AlzForum), Joanne Luciano
(Mitre), Scott Marshall (University of Amsterdam), Eric
Neumann (Clinical Semantics), Eric Prud’hommeaux
(W3C), Daniel Rubin (Stanford University), Jonathan Rees
(Creative Commons), Alan Ruttenburg (Creative
Commons), Matthias Samwald (Medical University of
Vienna), Andy Seaborne (HP), Karen Skinner (NIH), Susie
Stephens (Lilly), Elizabeth Wu (AlzForum).
Summary
• Brought domain experts together
• Learnt about Semantic Web technologies and tools
• Created a contiguous ontology
• Working on documents, e.g. URI note