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Thoughts on the Third International Conference on Biomedical Ontology (ICBO) for the AVI July 21-25, 2012 Graz, Austria Suzanne Santamaria, DVM, MS Veterinary Terminologist (and Ontologist) August 28, 2012 Vet Med Informatics Lab, Virginia Tech August 28, 2012 Vet Med Informatics Lab, Virginia Tech August 28, 2012 Thoughts On Attending the ICBO Gained knowledge Made connections Future work/collaboration Vet Med Informatics Lab, Virginia Tech August 28, 2012 ICBO 2012 Vet Med Informatics Lab, Virginia Tech August 28, 2012 Knowledge Organisms almost ubiquitous Ontologies in action Ontology development and maintenance General advice Vet Med Informatics Lab, Virginia Tech portwallpaper.com August 28, 2012 Ontologies in action Generate hypothesis Large scale research Predictive pharmacology Access resources Decision support with EHR Vet Med Informatics Lab, Virginia Tech August 28, 2012 Clinical Key Access resources Vet Med Informatics Lab, Virginia Tech August 28, 2012 Access resources Smart Searching System Smart Slide video Find It video Vet Med Informatics Lab, Virginia Tech August 28, 2012 Decision support with EHR Disease-Symptom Ontology Vet Med Informatics Lab, Virginia Tech August 28, 2012 Ontology Development and Maintenance Check class names Agile ontology engineering Visualization Vet Med Informatics Lab, Virginia Tech August 28, 2012 BioMixer Visualization Vet Med Informatics Lab, Virginia Tech August 28, 2012 General Look outward not inward Certificate of ontology in works Standards into ontologies Panel on finding users of ontologies All ontologies a work in progress! Vet Med Informatics Lab, Virginia Tech August 28, 2012 Connections Vet Med Informatics Lab, Virginia Tech August 28, 2012 Future work ACO requests, annexes? Herd, fledgling, yearling birds Non human primate, non human organism Adult squirrel, adult mouse ACO on Bioportal? “Lives in” relation Vet involvement What we do is paper-worthy Vet Med Informatics Lab, Virginia Tech August 28, 2012 Summary 1. 2. Good experience ICBO and OBO are relevant, important, and evolving 3. Seem open to animal work Animal work already important! Continue to contribute and participate Vet Med Informatics Lab, Virginia Tech August 28, 2012 ICBO 2013 - Montreal Photo Credit: The Montréal Buzz Photo Credit: Intelligent Travel, National Geographic Vet Med Informatics Lab, Virginia Tech August 28, 2012 References ICBO 2012 http://kr-med.org/icbofois2012/icbo.htm Links to papers on left hand side NCBO Bioportal Multi-ontology browser and visualization, etc. http://bioportal.bioontology.org/ ClinicalKey ClinicalKey: Terminology driven Semantic Search. Sivaram Arabandi and Helen Moran http://www.clinicalkey.com/ Smart Searching System Smart Searching System for Biomedical Information. Hong-Woo Chun, et al. http://59.27.71.173/ (intro in Korean; search in English and Korean) Disease-Symptom Ontology Interpreting Patient Data using Medical Background Knowledge. Heiner Oberkampf, et al. Vet Med Informatics Lab, Virginia Tech August 28, 2012 References BioMixer: Visualizing Mappings of Biomedical Ontologies. Elena Voyloshnikova, et al. Requirements and Strategy for the Development of a Pediatric Drug Ontology. Rachel Richesson, et al. OWL Representation of Drug Activities on Biological Systems. Samuel Croset. Developing the Animals in Context Ontology. Suzanne Santamaria, et al. Vet Med Informatics Lab, Virginia Tech August 28, 2012 References The SWO Project: A Case Study of Applying Agile Ontology Engineering Methods in Community Driven Ontologies. Maria Copeland, et al. Checking Class Labels against Naming Conventions: First experience with the OntoCheck Protégé Plugin. Daniel Schober, et al. Teaching Good Biomedical Ontology Design. Martin Boeker, et al. Vet Med Informatics Lab, Virginia Tech August 28, 2012 Acknowledgement Thank you to AVI for the travel support to attend the conference Vet Med Informatics Lab, Virginia Tech