Transcript Document

Diagnostic Decision Making using
High Frequency Bioresponses and Medical Imaging
Wavelet-based 3-D MFS in BMRI
Project with Dean, Park, and Ziegler (Div. Pulmonary and Critical
Care Med. Emory).
Project with CBIS and Emory (Winship Cancer Institute)
Communicated at ISBRA 2008, and part of NIH grant proposal 2008
About BESTA
Multifractal Analysis of H-NMR
Aim: To classify BMRI images to benign and malignant using wavelet-based
multifractal spectrum (MFS) of the image background
Preliminary results published Journal of Data Science 2008
Aim: To connect fractality descriptors to measures of sulfuramino acid (SAA) deficiency (cysteine)
Aims
Description of Data
The center aims are to promote research and consulting in all
aspects involving the planning of statistical experiments and
statistical modeling of results, with an emphasis on biomedical
data.
Members
Case
Control
Wavelet spectrum/Analysis
Melinda Higgins
Sky Lee
• Descriptors and realizations
of multifractal spectrum
Xavier Le Faucheur
In NMR spectra, a wealth of information is ignored. From the
resolution of tens of thousands of metabolites, traditional
analysis focuses on a few peaks. The idea is to look at the
spectrum as a (multi)fractal and summarize (multi)fractal
properties.
Brani Vidakovic
Hin Kyeol Woo
Lucy Petrova
• The extended three
dimensional concept of
wavelet-based multifractal
spectrum is used in
classification of BMRI
Karan Raturi
Contact Us
BESTA - Center for Bioengineering Statistics
Wallace Coulter Department of Biomedical Engineering
Georgia Institute of Technology
1213 Whitaker Building. Atlanta, GA 30332
Wavelets on Surfaces
Wavelet Enhancement of Mammograms
Xavier Le Faucheur (joint with Delphine Nain, Allen
Tannenbaum, and Brani Vidakovic)
Project with Dubois Bowman (RSPH, Emory)
Preliminary results published in SPIE 6763, 2007
Communicated at ISBRA 2007 and Georgia Cancer Coalition seed grant award
Shape signal (x,y,z)
Encoding using Spherical Wavelets
• Wavelet Image Interpolation
(WII) is a wavelet-based
approach to enhancement of
digital mammography images.
Wavelet Coefficients
Error
Bayesian Wavelet Shrinkage
using Shape Features
Shrunk
Wavelet Coefficients
Smooth Shape Signal
Inverse Wavelet Transform
Procedure
Original Shape
VOCs Detecting Breast Cancer
Noisy Shape
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• WII involves the application of
an inverse wavelet
transformation to a coarse or
degraded image and constructed
detail coefficients to produce an
enhanced higher resolution
image.
1. One performs k wavelet decomposition steps on empty image. The transform is
linear and the resulting smooth and detail sub-matrices are all zero-matrices.
2. The degraded image from a digital mammogram is inserted into the position of
the smooth matrix containing zeros.
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3. The object in 2 is back-transformed by k steps.
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Recovered Shape after Shrinkage
Squared Error
This process increases the resolution of the degraded image and contains 4 k
times the number of pixels in the original input.
Project with Charlene Bayer (GTRI), Sheryl GabramMendola (Winship), and Boris Mizaikoff (University of Ulm)
Aim: To diagnose subject with cancer
based on the VOC (Volatile Organic
Compound) content of their breath
Description of Data: 383 VOCs per
subject; 35 subjects (24 controls, 11 cases)
Dimension Reduction/Analysis
• Dimension reduction
from 383 VOCs to 2
informative components
• Nonlinear dimension
reduction is very
discriminative