Transcript authors` original image

AltSplice
AltTrans
Makes gene-EST alignments.
Delineates
introns/exons,
splice events, splice patterns,
peptide variants, etc.
Annotates for: Splice signals,
SNP, expression states, humanmouse conservation, etc.
Passes on the data of splice
patterns, confirming ESTs, and
alignments to AltTrans
Examines the ESTs for
polyA cleavage site and
signal motif.
Groups the ESTs (that
could be annotated for
the above) based on
splice
sites
and
terminating polyA site to
form Transcript Patterns.
AltPAS
Detects polyA sites gene-wide
independent of splicing patterns.
Integration pipeline
Maps AltPAS polyA sites onto
AltTrans genes. Consolidates the
(AltTrans & AltPAS) polyA sites.
Annotates the transcript patterns
for skipped polyA sites using the
combined list.
Integrated AltTrans-AltPAS data
AltSplice :splice patterns/events/introns/exons.
AltTrans: transcript patterns/polyA events/integrated set of polyA sites.
Download of
AltTrans data
Single-box query (gene
symbol/keyword/cross
references
Advanced Query
Page
Distributed annotation
onto Ensembl system