brian_leftright

Download Report

Transcript brian_leftright

Need
•Applying Luciferase
and its components in
reaction for making a
bio-detector.
•Determining oxygen
concentrations in
environments
Bioluminescence
C
Lux Operon
D
A
B
E
G
Flavin reductase
Fatty acid reductase
Luciferase
-LuxCDE -fatty acid reductase- converts organic compounds to
oxidizable luciferins
An aldehyde and fmnh2 allow luciferase and luciferin to combine which in its
- AB have been identified as the alpha and beta subunits of luciferase oxidations phase, creates light. Luciferase allows the oxygen to combine with
- LuxG has been found and is shown to be an effective flavin reductase the luciferin which produces photons of light at around 490 nanometers
making a blue green light.
Luciferase
-Vibrio campbellii instead of Vibrio harveyi was used
- (Pimchai, 2008) The superior thermo stability and tighter binding of
FMNH (-) make Vibrio campbellii a more tractable Luciferase
- (Jaffe, 2008) Vibrio campbellii is used which has been shown to be more
stable, stronger and a better light producer than its homologue.
Coupled Assay
Luciferase reaction
+
C1:FMN + NADH
FMNH+NAD +H2O2
Luciferase
FMNH2 + RCHO + O2
FMN + RCOOH + H2O
Light (hv)

C1, a cofactor, combines with FMN which is the flavin mono nucleotide and a substrate. This caused the FMN to be reduced to FMNH2 and produces and oxidized
NAD+ and hydrogen peroxide. The FMNH2, aldehyde and O2 react under the luciferase and produce photons as a by product to FMN, acid and water. C1 provides
enough FMN to the system, however the excess FMNh2 added to the system boost its light producing capabilities. With the increase of free FMNH2 not produced
by the C1:FMN, competition occurs between the two channels because of the Free FMNH2 utilizing more oxygen decreasing the production of NAD+.
Literature Review
- Hastings (1999)- “The Role of Oxygen in
the Photo excited Luminescence of
Bacterial Luciferase”
- Nealson (2002)- “The Total Luminous
Efficiency of Luminous Bacteria”
Purpose
Develop a method of correlating the luminosity of the luciferase
reaction with the oxygen concentration in a given environment
Results
 Standard curves were calculated based on the results of the various test
 Equations of the curves calculated by breaking graphs in to parts and
creating trend lines of either polynomial equations or algorithmic
equations in order to define graphs
 Equations shown are for trials containing no extra FMN added to the
system along with HPA and 9.2 micro molar solution of C1 and Lux
4
-0.000x
3
0.008x
y=
+
2
0.141x + 1.356x + 20.69
R² = 1
Equation of curve with range
less than 146 a.u
3
0.001x
2
0.218x
y=
+ 16.38x 246.4
R² = 1
Equation of curve with range
greater than 146a.u
Discussion
Adding free FMN causes the increase of hydrogen peroxide which
decreases the light production path.
Taking away free FMN created a higher yield of light since the wasteful
FMNH- consumption to produce H2O2 was lessen.
FMNH2 in higher oxygen concentrations reacts with oxygen rather than
aldehyde to produce H2O2 which inhibits FMNH2 from going into the
luciferase reaction
Conclusion
The oxygen concentration of the environment has an impact on the
luminosity of Vibro campbellii luciferase
The luminosity of the reaction can be used to correlate the oxygen
concentration of a given environment
Future 0Studies
-Using increasing amounts of concentrations of Lux in order to obtain a
more defferiantable curve
-Using different strains and species of Lux in order to test for their effect
on the system
Bibliography
Branchini, BR; Magyar, RA; Murtiashaw, MH; Anderson, SM; and others. (1999) Site-directed mutagenesis of firefly luciferase active site amino acids: A proposed model for
bioluminescence color. Biochemistry 38:13223-13230.
Chaiyen, Pimchai. LuxG is a functioning flavin reductase for bacterial luminescence. Department of Biochemistry and Center for excellence in Protein structure and function. 9/15/07.
Dave and Barie
Deo, S.K., Mirasoli, M. and Daunert, S. (2005) Bioluminescence resonance energy transfer from aequorin to a fluorophore: an artificial jellyfish for applications in multianalyte detection.
Analytical and Bioanalytical Chemistry, 381: 1387-1394.
Hastings, Woodland. Chemistries and colors of bioluminescent reaction: a review. Department of Molecular and Cellular Biology, Harvard University. 1005. Elsevier Science V.V . SSDI
0378-1119
Harvey, Newton. The Total Luminous Efficiency of Luminous Bacteria. The journal of General Physiology. September . 1975
Hastings. Woodland. The Role of Oxygen in the Photo excited Luminescence of Bacterial Luciferase. Department of Molecular and Cellular Biology. Harvard. The journal of Biological
Chemistry. Vol 242. NO 4 Issue February. Pg 720-726
Jaffe, Lionel. Bioluminescence. May 2008. http://www.lifesci.ucsb.edu/~biolum/
Jablonski, Edward. Immobilization of bacterial luciferase and FMN reductase on glass rods. Pro. Natl. Acad. Sci USA. Vol. 73, no 11 pp 3848-3851. November 1976
McElroy, W. D., and M. DeLuca. 1985. Firefly luminescence, p.387-399. In J. G. Burr (ed.), Chemi- and bioluminescence.Marcel Dekker, Inc., New York.
Nakamura, Makiko. Construction of streptavidin luciferase fusion protein for ATP sensing with fixed form. Biotechnology Letters 26: 1061-1066. 2004. Pg 1061-1072
Ron, Eliora. Biosensing enivornmental pollution. Current Opinion in Biotechnology, Volume 18. Issue 3, June 2007. Pg 252-256
Shimomura, O. (2005) The discovery of aequorin and green fluorescent protein. Journal of Microscopy, 217: 3-15.
Tannous, B.A., Kim, D.-E., Fernandez, J.L., Weissleder, R. and Breakefield, X.O. (2005) Codon-Optimized Gaussia Luciferase cDNA for Mammalian Gene Expression in Culture and in
Vivo. Molecular Therapy, 11: 435-443.
Taylor, Amanda. Bioluminescence detection of ATP release mechanisms in epithelia. American Physiological Society. 1998. Pg. c1391. Ajpcell.physiology.org
Wet, Jeffery. Firefly Luciferase Gene: Structure and Expression in Mammalian Cells. 1986. Departments of Biology' and Chemistry,2 University of California. MOLECULAR AND
CELLULAR BIOLOGY
Verhaegen M. and Christopoulos, T.K. (2002) Recombinant Gaussia luciferase. Overexpression, purification and analytical application of a bioluminescent reporter for DNA
hybridization. Analytical Chemistry, 74: 4378-4385 http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=1932783